PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003767.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 396aa    MW: 44531.4 Da    PI: 8.3001
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003767.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.2e-09132155326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   ++Cr f+r GtC+yGd+C+F H+
  Pbr003767.1 132 VRICRSFFRWGTCSYGDKCRFRHV 155
                  799******************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-1269101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-769101IPR000571Zinc finger, CCCH-type
SMARTSM003560.0227197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0427198IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798129157IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6131155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-7133155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSTPLPTPQF FAQYLESGDS GRQMKHQIPT EEREIKAQSD INSQAFKKPR TSDAVSNSNA  60
ASGQNKMLPS YYKTQLCRKF QMGCCFSGQR CSFAHGTSDL RRTLRDAQGM ETEKGSLVRR  120
TWNVDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVSPENI RDSSFISIST AGGSAQFDCK  180
KSMELRKLCG YTTPECGSVQ ANSLTTSMRG NNASNRRMGI ATAYKQGQST QCNLEWNELE  240
KLSRIYADWI EDMPLLHGSS NKVECYSSLA SSHAVCNRYS MFVSLELALV KLQANFCLYA  300
FDYLHSNSPP QDGKNHSNVV DISSLKNMKH VHILHIVEYP NLDELEIYCA ERARKDPRMS  360
MMTNHACFLG LQFVQDAEIL GEECPALKKL PLKED*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349123.10.0PREDICTED: zinc finger CCCH domain-containing protein 28-like
TrEMBLM5XE539e-60M5XE53_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.12e-12C3H family protein